PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G210600.1
Common NameB456_008G210600, LOC105764837
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 234aa    MW: 25805.2 Da    PI: 9.116
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G210600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-1954103255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a++ a+++++g
  Gorai.008G210600.1  54 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDDAALRFKG 103
                         7********.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.8E-3353112IPR001471AP2/ERF domain
SMARTSM003803.4E-3754117IPR001471AP2/ERF domain
CDDcd000181.54E-1954112No hitNo description
PfamPF008473.1E-1354103IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2254112IPR016177DNA-binding domain
PROSITE profilePS5103224.93554111IPR001471AP2/ERF domain
PRINTSPR003671.4E-115566IPR001471AP2/ERF domain
PRINTSPR003671.4E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNAMVHALAQ VIGNNNSNPL LQLHDDQHPN PTAQQNQSHQ QPQPQDQGNA RRRHYRGVRQ  60
RPWGKWAAEI RDPKKAARVW LGTFETAEAA ALAYDDAALR FKGSKAKLNF PERVQGRLES  120
SYLTTTRQEL ERTEAPPHPP PTYPNISQYA QLLSGGLPNT AFNYAMPSGA AYGSWPAFTT  180
SSHSSSSSSS STTLTSQQQG YMGGFSLHFG GSSPTSDHTN NMGDYDYYYS RDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A1e-2750114166ATERF1
2gcc_A1e-2750114166ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5894283e-73JX589428.1 Gossypium hirsutum clone NBRI_GE24128 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012439061.11e-174PREDICTED: ethylene-responsive transcription factor ERF115-like
SwissprotQ9FH544e-52EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A0D2T9W81e-174A0A0D2T9W8_G
STRINGVIT_17s0000g00200.t019e-59(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-34ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]